IGDD: a database of intronless genes in dicots.
Identifieur interne : 001829 ( Main/Exploration ); précédent : 001828; suivant : 001830IGDD: a database of intronless genes in dicots.
Auteurs : Hanwei Yan [République populaire de Chine] ; Xiaogang Dai [République populaire de Chine] ; Kai Feng [République populaire de Chine] ; Qiuyue Ma [République populaire de Chine] ; Tongming Yin [République populaire de Chine]Source :
- BMC bioinformatics [ 1471-2105 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Arabidopsis, Carica, Magnoliopsida, Populus, Salix, Vitis.
- Bases de données génétiques, Interface utilisateur, Internet, Introns.
English descriptors
- KwdEn :
- MESH :
- genetics : Arabidopsis, Carica, Magnoliopsida, Populus, Salix, Vitis.
- Databases, Genetic, Internet, Introns, User-Computer Interface.
Abstract
BACKGROUND
Intronless genes are a significant characteristic of prokaryotes. Systematic identification and annotation are primary and crucial steps for determining the functions of intronless genes and understanding their occurrence in eukaryotes.
DESCRIPTION
In this paper, we describe the construction of the Intronless Genes Database in Dicots (IGDD; available at http://bio.njfu.edu.cn/igdd/ ), which contains data for five well-annotated plants including Arabidopsis thaliana, Carica papaya, Populus trichocarpa, Salix suchowensis and Vitis vinifera. Using highly visual settings, IGDD displays the structural and functional annotations, the homolog groups, the syntenic relationships, the expression patterns, and the statistical characteristics of intronless genes. In addition, useful tools such as an advanced search and local BLAST are available through a user-friendly and intuitive web interface.
CONCLUSION
In conclusion, the IGDD provides a comprehensive and up-to-date platform for researchers to assist the exploration of intronless genes in dicot plants.
DOI: 10.1186/s12859-016-1148-9
PubMed: 27465544
PubMed Central: PMC4964316
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Qiuyue" sort="Ma, Qiuyue" uniqKey="Ma Q" first="Qiuyue" last="Ma">Qiuyue Ma</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Forest Genetics & Biotechnology, Nanjing Forestry University, Nanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics & Biotechnology, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Yin, Tongming" sort="Yin, Tongming" uniqKey="Yin T" first="Tongming" last="Yin">Tongming Yin</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Forest Genetics & Biotechnology, Nanjing Forestry University, Nanjing, China. tmyin@njfu.com.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics & Biotechnology, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC bioinformatics</title><idno type="eISSN">1471-2105</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (genetics)</term><term>Carica (genetics)</term><term>Databases, Genetic (MeSH)</term><term>Internet (MeSH)</term><term>Introns (MeSH)</term><term>Magnoliopsida (genetics)</term><term>Populus (genetics)</term><term>Salix (genetics)</term><term>User-Computer Interface (MeSH)</term><term>Vitis (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arabidopsis (génétique)</term><term>Bases de données génétiques (MeSH)</term><term>Carica (génétique)</term><term>Interface utilisateur (MeSH)</term><term>Internet (MeSH)</term><term>Introns (MeSH)</term><term>Magnoliopsida (génétique)</term><term>Populus (génétique)</term><term>Salix (génétique)</term><term>Vitis (génétique)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Carica</term><term>Magnoliopsida</term><term>Populus</term><term>Salix</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Carica</term><term>Magnoliopsida</term><term>Populus</term><term>Salix</term><term>Vitis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term><term>Internet</term><term>Introns</term><term>User-Computer Interface</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données génétiques</term><term>Interface utilisateur</term><term>Internet</term><term>Introns</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Intronless genes are a significant characteristic of prokaryotes. Systematic identification and annotation are primary and crucial steps for determining the functions of intronless genes and understanding their occurrence in eukaryotes.</p></div><div type="abstract" xml:lang="en"><p><b>DESCRIPTION</b></p><p>In this paper, we describe the construction of the Intronless Genes Database in Dicots (IGDD; available at http://bio.njfu.edu.cn/igdd/ ), which contains data for five well-annotated plants including Arabidopsis thaliana, Carica papaya, Populus trichocarpa, Salix suchowensis and Vitis vinifera. Using highly visual settings, IGDD displays the structural and functional annotations, the homolog groups, the syntenic relationships, the expression patterns, and the statistical characteristics of intronless genes. In addition, useful tools such as an advanced search and local BLAST are available through a user-friendly and intuitive web interface.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>In conclusion, the IGDD provides a comprehensive and up-to-date platform for researchers to assist the exploration of intronless genes in dicot plants.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">27465544</PMID><DateCompleted><Year>2016</Year><Month>12</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2105</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><PubDate><Year>2016</Year><Month>Jul</Month><Day>27</Day></PubDate></JournalIssue><Title>BMC bioinformatics</Title><ISOAbbreviation>BMC Bioinformatics</ISOAbbreviation></Journal><ArticleTitle>IGDD: a database of intronless genes in dicots.</ArticleTitle><Pagination><MedlinePgn>289</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12859-016-1148-9</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Intronless genes are a significant characteristic of prokaryotes. Systematic identification and annotation are primary and crucial steps for determining the functions of intronless genes and understanding their occurrence in eukaryotes.</AbstractText><AbstractText Label="DESCRIPTION" NlmCategory="METHODS">In this paper, we describe the construction of the Intronless Genes Database in Dicots (IGDD; available at http://bio.njfu.edu.cn/igdd/ ), which contains data for five well-annotated plants including Arabidopsis thaliana, Carica papaya, Populus trichocarpa, Salix suchowensis and Vitis vinifera. Using highly visual settings, IGDD displays the structural and functional annotations, the homolog groups, the syntenic relationships, the expression patterns, and the statistical characteristics of intronless genes. In addition, useful tools such as an advanced search and local BLAST are available through a user-friendly and intuitive web interface.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">In conclusion, the IGDD provides a comprehensive and up-to-date platform for researchers to assist the exploration of intronless genes in dicot plants.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yan</LastName><ForeName>Hanwei</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Key Laboratory of Forest Genetics & Biotechnology, Nanjing Forestry University, Nanjing, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, Anhui Agricultural University, Hefei, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dai</LastName><ForeName>Xiaogang</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Key Laboratory of Forest Genetics & Biotechnology, Nanjing 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Chine"><noRegion><name sortKey="Yan, Hanwei" sort="Yan, Hanwei" uniqKey="Yan H" first="Hanwei" last="Yan">Hanwei Yan</name></noRegion><name sortKey="Dai, Xiaogang" sort="Dai, Xiaogang" uniqKey="Dai X" first="Xiaogang" last="Dai">Xiaogang Dai</name><name sortKey="Feng, Kai" sort="Feng, Kai" uniqKey="Feng K" first="Kai" last="Feng">Kai Feng</name><name sortKey="Ma, Qiuyue" sort="Ma, Qiuyue" uniqKey="Ma Q" first="Qiuyue" last="Ma">Qiuyue Ma</name><name sortKey="Yan, Hanwei" sort="Yan, Hanwei" uniqKey="Yan H" first="Hanwei" last="Yan">Hanwei Yan</name><name sortKey="Yin, Tongming" sort="Yin, Tongming" uniqKey="Yin T" first="Tongming" last="Yin">Tongming Yin</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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